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  • "_vertexNative" ==>> "--useReconNative --useRigidAlign" 
  • "_vertexNativeScale" ==>> "--useReconNative --useRigidAlign –useScale --useScale" 
  • "_vertexMNI" ==>> "--useReconMNI --useRigidAlign" 
  • "_vertexMNIScale" ==>> "--useReconMNI --useRigidAlign –useScale--useScale"

The output of this step is a 4D nifti file (*.nii.gz) with the name as indicated in the -o option, and a _mask file with a similar name. Additional files with the same name as the design matrix but with different extensions are also created: *.con for t-contrast, *.fts for f-contrast.

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