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- T1_initnative_[N]series
- Single T1 in original native space; if more than one series was collected, this file is the average of all series.
- T1_manual2MNI
- A single T1 that can (optionally) be manually registered to the template. This initially is simply a copy of the native T1 (previous step).
- T1_ref_vox...bb...
- A resliced version of the T1; this becomes the reference for native space.
| Fig. item | Meaning |
|---|---|
| 1 | subject folder in T1preprocess |
| 2 | individual series with nifti files (copied from rawimages) |
| 3 | average of T1 series; defines native space |
| 4 | copy of native space T1, which can optionally be manually registered |
| 5 | resliced versions of T1; two different reslice options are used (on with 0.7mm voxels the other with 0.9mm) |
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