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- Subject T1preprocess subfolder
- Copies of individual series T1 images (some protocols use multiple T1 scans that are averaged to create a clean image).
- T1_initnative_[N]seriesSingle
- T1 in original native space; if more than one series was collected, this file is the average of all series.
- T1_manual2MNI
- A single T1 that can (optionally) be manually registered to the template. This initially is simply a copy of the native T1 (previous step).
- T1_ref_vox...bb...
- A resliced version of the T1; this becomes the reference for native space.
- There may be more than one folder, since we sometimes use different resolutions
| Fig. item | Meaning |
|---|---|
| 1 | subject folder in T1preprocess |
| 2 | individual series with nifti files (copied from rawimages) |
| 3 | average of T1 series; defines native space |
| 4 | copy of native space T1, which can optionally be manually registered |
| 5 | resliced versions of T1; two different reslice options are there (one with 0.7mm voxels the other with 0.9mm, according to the parameters in the Analysis GUI) |
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