ln CSPM, click the ‘Preclinical’ button
...
Click the ‘Preprocess after Coreg’ button. This step will take a few hours to complete, depending on how many subjects you have. Note: there is now an alternative to this step, using the ANTs-in-n-Out button in the ‘Preclinical' GUI, which may provide better results. See the 'ANTs’ confluence page for instructions.
Once the ‘Preprocess after Coreg’ step is finished, all of the files necessary for analysis will be in your ‘stats’ folder.
You can now analyse your data by following the instructions in the ‘Data Analysis and Visualisation’ page.