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The "Vertex Analysis: requires you to prepare two sets of files: individual segmented structures combined into one file, and a design matrix and t and f contrasts saved as a set of files. 

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  • .../LinuxShare/FIRST/ID99N20G2/designs/2group_covage/
  • .../LinuxShare/FIRST/ID99N20G2/designs/1group_covagesex/
  • .../LinuxShare/FIRST/ID99N20G2/designs/correlationage/
  • .../LinuxShare/FIRST/ID99N20G2/designs/correlationage_covsex/
  • .../LinuxShare/FIRST/ID99N20G2/designs/regressionageAHI_covsex/
2) Open a terminal in this "design folder"
3) Open Glm
 

Either start from the FSL GUI (if so, open fsl in the design folder), or from a terminal "cd" to the directory, and type Glm (case sensitive).

Example:

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4) Select "Higher-level / non-timeseries design" from the pull-down menu.

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You will copy the design folder, including all the files, to subfolders of each structure you analyze.

Tip: Glm from FSL GUI

Type "fsl" to start the FSL GUI, click "Misc " then "GLM Setup".

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