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The scripts rely on symbolic links, which cannot be created on Windows shared folders. To run in a VM with the SUBJECTS_DIR on the shared folder, the file "track-preproc" (trac-preproc as of 2013-08-20) has to be edited to change all the symbolic link creations to file-copy instead. This may cause a problem if the "linked" files are changed.

Running

Each subject needs T1 anatomicals that have been processing with the usual FreeSurfer analysis, and DTI data in the format of DICOM or custom nifti files. A configuration file is used to define subjects and locations.

Configuration File (dmrirc)

This is a required file which is passed to the TRACULA processing steps.