Make sure you have updated all the matlab files, not jsut CSPM or SPM12, since MRIcroS is in the ...\matlab\mricros subfolder.
Start the GUI:
First step: show the shape (refer to Fig. 1)
- Select the mask file; say Yes to create filled mask
- Deselect Overlay 1 and 2, click Display
Overlays
Select the file to overlay
For increasing/decreasing, you can select separate files and use different colormaps
To get range of values, use the CSPM function Image intensity info (or type im_info at the command prompt)
This will display min, max and so on, so you can optionally set these so that the color scale is fixed.
Note that you may need to set the minimum threshold to just over 0, as otherwise everything might be colored with the Overlay.
Save images at fixed intervals
Display the VOI and overlays; set the view where you want it, at a know angle
Edit the CSPM file shape_makeviews
>>edit shape_makeviews
Videos
Edit the CSPM file shape_video
>>edit shape_video
Figure 1
