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These contain structure-specific files.
Structures within a set
Structure content: scaling subfolders an concatenated bvars
The structure folder contains the concatenated bvars which is simply all studies' bvars files for that structure concatenated. This file is what gets processed in the vertex analysis.
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The four scaling options for the FIRST vertex analysis are separated into four subfolders:
Scaling content: design subfolders and example scripts
Example scripts are created, which may be useful for manual processing (not needed for CSPM processing).
Each scale subfolder contains design subfolders. These are taken from the set designs.
Design content: design files, displacement files, mask, and results-by-correction method subfolders
The design files are copied from the "[set folder]\designs\..." subfolders. These include the contrast files "design.con" and "design.fts," as well as the design matrix used by the statistical analysis (randomise).
The displacements for each subject are stored in the "..._vertx*.nii.gz" file, which has one volume for each subject. The scale is displacement towards the mean surface in voxel units. The mean surface is represented by the "..._vertex*_mask.nii.gz" file.
The results for each correction method are stored in subfolders (clustere, clusterm, tfce, vox).
