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[user@localhost temp]$ randomise -i L_Hipp_vertexMNI.nii.gz -m L_Hipp_vertexMNI_mask.nii.gz -o L_Hipp_vertexMNI_rand -d design.mat -t design.con -f design.fts (more options required)

more options:
Just as in SPM Results we put in statistical tests (F or t) and thresholds, so we do the same with randomise (see here for initial details). A starting point might be 

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