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Updates (or "patches") are available from the FSL and FreeSurfer websites, and can be installed with a few manual steps.
FSL
The current version is displayed at the top of the FSL GUI (see below). It is also shown in the help, for example version 5.04:
[user@localhost ~]$ randomise --help
Part of FSL (build 504)
randomise v2.9
...
Go to the FSL patch download location (http://fsl.fmrib.ox.ac.uk/fslfsldownloads/fslwikipatches/FSL). (See right for more details.)
Select the correct file; this is tricky because you can't see the filename unless the cursor is over itthe files look the same unless the cursor is over it, when you can read the name in the status bar. Look for the Linux version (Centos 6 64-bit ), and the file that starts from the current version; if not sure choose the one that includes all patches (with the "x" in it, e.g., 5.0.x below); this will usually be larger. The other file only upgrades the latest step (the size will be smaller).
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Download this file, and move it to the LinuxShare folder.
In Linux, copy this file to the folder "/usr/local" (Use the FIle Browser):
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Open a terminal in /usr/local
- Either open a terminal as per usual and go [user@localhost temp]$ cd /usr/local, or from the File Browser (see right).
Make sure FSL is not running
Running the following command to unpack the new files and overwrite the old version; the filename will change.
[user@localhost temp]$ tar -zxvf fsl-centos6_64-patch-5.0.9_from_5.0.x.tar.gz
Note: once you start typing the file name, use the Linux feature where "Tab" brings up the remainder of the file name.
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[user@localhost temp]$ fsl
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You can delete all the tar.gz files, including any in usr/local, LinuxShare, or Windows.
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From the FSL wiki (Google FSL), go to patches.
Go to the downloads page
Opening Terminal in folder from File Browser
Navigate to the folder, then from the File menu select "Open in Terminal"
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