Network file server

There are three top-level folders, Subject Data, Analysis, and LinuxShare.

Subject Data

This folder contains the raw data. What is here cannot be replicated, in contrast to the Analysis folder.

Z:\Subject Data contains project folders. The main one with Subject_100,... etc is

Z:\Subject Data\Luke

Others that you will likely use are

Z:\Subject Data\HCP

Z:\Subject Data\IXI

Z:\Subject Data\OASIS

Each project folder has subfolders for each subject. They are not organized into Control/Patient.

Analysis

Analysis contains two subfolders, Preprocess and Set. The Preprocess folder has subfolders for each project, and the Project Configuration should use these. Examples could be:

Z:\Analysis\Preprocess\OSA2013

Z:\Analysis\Preprocess\Migraine

Z:\Analysis\Preprocess\Melbourne2016

The Set folder contains many analyses, so each person should create their old subfolder. Here are some examples:

Z:\Analysis\Zeynab\PainfMRI

Z:\Analysis\Noemi\SUIT

LinuxShare

This folder is only for "sharing" with Linux. There is no MATLAB preprocessing, subject data, or sets here. There will be FreeSurfer and FSL processed data.

Moving data location

To move the data, follow these steps:

Copy study data
Correct study data paths
- CPM Utilities menu
Copy project preprocess data
Correct project preprocess paths
- CSPM Utilities menu
Correct SPM.mat files under new project path(s)
- CSPM Utilities menu

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