CSPM Custom Analysis Software
CSPM (custom-SPM) is a collection of matlab programs used for various MRI operations, including a full analysis system. See CSPM programs for individual routines.
Install a new Matlab
Storing raw data and manual tracing: MRI Study Data
Overview
The analysis needs manual setting up, after which the actually procedures are automatic. The data needs to be stored in well-backed up location, you need to enter the subject information including what scans were performed, and you also need to choose an analysis folder. You will then need to configure an analysis - what groups, subjects, scans etc.
To run any of the analysis functions, first select an analysis from the pop-up menu.
Subject information: click on the "Subject Info" button (top-right).
Restrict which subjects you look at (and soon create new groups) CSPM filter
Add a description to the output folders: enter text in "Description" field.
Configuring and Selecting Studies
Programming
CSPM-changes to SPM files.
Updating
You can use WinSCP to Synchronize your spm5 folder to the Share drive, where the latest version is located - Ctrl^S (or Command -> Synchronize) starts the synchronization GUI - it should look something like this:
Visualization