ANTs

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Install WSL

Use latest release of Ubuntu

Set default user to be root (make life simpler with permissions): Start PowerShell => C: => ubuntu config --default-user root (details)

Install conda

wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh

You have to view then agree to terms, then run install responding to various questions

Install ANTs

conda create -n antsenv -c conda-forge ants -y   # create env and install ANTs
conda activate antsenv

Note: all sessions need to start with conda activate antsenv

Create folders

(antsenv) root@REDWSONFAC26495:~# mkdir ~/rats_mri_project/
(antsenv) root@REDWSONFAC26495:~# cd rats_mri_project/
(antsenv) root@REDWSONFAC26495:~/rats_mri_project# mkdir template
(antsenv) root@REDWSONFAC26495:~/rats_mri_project# mkdir priors
(antsenv) root@REDWSONFAC26495:~/rats_mri_project# mkdir subjects
(antsenv) root@REDWSONFAC26495:~/rats_mri_project# mkdir outputs