MRI scans completed at the BMC in 2017 with our new protocol should be documented in MATLAB as follows:
MRI Sequences
Order | Type/Protocol | Details | Series | Notes |
---|---|---|---|---|
1 | T1 | T1w MPR | Record 2nd series (raw folder) | indicate: motion artifact in comments if present in scan. If an artifact is present |
in multiple T1 scans the average of all the images |
will be taken. Indicate the head coil channel used during the scan in comments as well like: 64ch head coil | ||||
2 | T1 | T1w MPR | Record 4th series *if available* (raw folder) | review nifti files with Paul. If image looks dark do not include on Matlab |
3 | pd+T2 | T2pd | Record only series (raw folder) | |
4 | Spin Echo Field Map | HCP Spin Echo Field Map | Record 2nd series (raw folder) or only series (as applicable) | should have 3 nifti files |
5 | fMRI | rfMRI REST AP | Record 2nd series (raw folder) | indicate if: fixation cross was/was not shown during scan |
6 | DTI | DWI 98dir AP | Record 2nd series (raw folder) | |
DTI | DWI 99dir AP | Record 2nd series (raw folder) | ||
7 | tgse_pcasl | ASL REST | Record 2nd series (raw folder) | |
8 | Handgrip | HandGrip AP | Record 2nd series (raw folder) | If a Subject repeats a challenge indicate: Subject repeated the XXXX challenge #xs. The XXXX series of her #nd attempt is recorded here |
9 | Valsalva | Valsalva AP | Record 2nd series (raw folder) | |
10 | Insp. Loading | InspLoading AP | Record 2nd series (raw folder) | |
11 | Breathhold | BreathHold AP | Record 2nd series (raw folder) | |
12 | Stroop | Stroop AP | Record 2nd series (raw folder) | |
13 | T2 | T2w SPC | Record 2nd series (raw folder) | |
14 | HiResHP | TSE HiResHp | Record 2nd series (raw folder) | |
15 | Field Mapping | Field Mapping GRE | Record only series (raw folder) | |
16 | Field Mapping_phase | Field Mapping GRE phase | Record only series (raw folder) |