MRI scans completed at the BMC in 2017 with our new protocol should be documented in MATLAB as follows:
MRI Sequences
| Order | Type/Protocol | Details | Series | Notes |
|---|
| 1 | T1 | T1w |
_ MPR
| Record 2nd series (raw folder) | indicate: motion artifact in comments if present in scan. If an artifact is present in multiple T1 scans the average of all the images will be taken. Indicate the head coil channel used during the scan in comments as well: 64ch head coil |
| 2 | T1 | T1w |
_ | MPR | Record 4th series *if available* (raw folder) | review nifti files with Paul. If image looks dark do not include on Matlab |
| 3 | pd+T2 | |
T2_pd+t2_tse_tra T2pd
| Record only series (raw folder) |
|
| 4 | Spin Echo Field Map | HCP Spin Echo Field Map | Record 2nd series (raw folder) |
4| or only series (as applicable) | should have 3 nifti files |
| 5 | fMRI | rfMRI |
__| AP | Record 2nd series (raw folder) |
5| indicate if: fixation cross was/was not shown during scan |
| 6 | DTI | DWI |
__| AP | Record 2nd series (raw folder) |
|
| DTI | DWI |
__ASL AP | Record 2nd series (raw folder) |
6 | ASL_| tgse_pcasl | ASL REST
| Record 2nd series (raw folder) |
7Spin Echospinechofieldmap_8 | Field Mapping | Field_Mapping_GRE | 9 | T2 | T2W_SPC | 10 | Breathhold | Breathhold_AP | 11 | Handgrip | Handgrip_AP | 12 | Insp. Loading | InspLoading_AP | 13 | Stroop | Stroop_AP | 14 | Valsalva | Valsalva_AP | 15 | HiResHP | TSE_HiResHP| Record 2nd series (raw folder) | If a Subject repeats a challenge indicate: Subject repeated the XXXX challenge #xs. The XXXX series of her/his #nd attempt is recorded here |
| 9 | Valsalva | Valsalva AP | Record 2nd series (raw folder) |
|
| 10 | Insp. Loading | InspLoading AP | Record 2nd series (raw folder) |
|
| 11 | Breathhold | BreathHold AP | Record 2nd series (raw folder) |
|
| 12 | Stroop | Stroop AP | Record 2nd series (raw folder) |
|
| 13 | T2 | T2w SPC | Record 2nd series (raw folder) |
|
| 14 | HiResHP | TSE HiResHp | Record 2nd series (raw folder) |
|
| 15 | Field Mapping | Field Mapping GRE | Record only series (raw folder) |
|
| 16 | Field Mapping_phase | Field Mapping GRE phase | Record only series (raw folder) |
|
Image Added
- Include the head coil used during the MRI scan in the "Comments" column of study table on Matlab.
- Trace the RAW path of the series from the T: Drive and paste it to the appropriate Data Path row.
- Note: Previous protocols included Nifti & Dicom files. Dicom & Raw folders are the same. This current protocol uses the "Raw" folder instead of the "Dicom" name.
You are now ready to create create projects and patients images on CSPM