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MRI scans completed at the BMC in 2017 with our new protocol should be documented in MATLAB as follows:

Order	Type/Protocol	Details	Series	Notes
1	T1	T1w MPR	Record 2nd series (raw folder)	indicate: motion artifact in comments if present in scan. If an artifact is present in multiple T1 scans the average of all the images will be taken. Indicate the head coil channel used during the scan in comments as well: 64ch head coil
2	T1	T1w MPR	Record 4th series **if available (raw folder)**	review nifti files with Paul. If image looks dark do not include on Matlab
3	pd+T2	T2pd	Record only series (raw folder)
4	Spin Echo Field Map	HCP Spin Echo Field Map	Record 2nd series (raw folder) or only series (as applicable)	should have 3 nifti files
5	fMRI	rfMRI REST AP	Record 2nd series (raw folder)

5

	indicate if: fixation cross was/was not* shown* during scan
6	DTI	DWI 98dir AP	Record 2nd series (raw folder)
6	DTI	DWI 99dir AP	Record 2nd series (raw folder)

6


7	tgse_pcasl	ASL REST	Record 2nd series (raw folder)

7


8	Handgrip	HandGrip AP	Record 2nd series (raw folder)

8

	If a Subject repeats a challenge indicate: Subject repeated the XXXX challenge #xs. The XXXX series of her/his #nd attempt is recorded here
9	Valsalva	Valsalva AP	Record 2nd series (raw folder)

9


10	Insp. Loading	InspLoading AP	Record 2nd series (raw folder)

10


11	Breathhold	BreathHold AP	Record 2nd series (raw folder)

11


12	Stroop	Stroop AP	Record 2nd series (raw folder)

12


13	T2	T2w SPC	Record 2nd series (raw folder)

13


14	HiResHP	TSE HiResHp	Record 2nd series (raw folder)

XX


15	Field Mapping	Field Mapping GRE	Record only series (raw folder)
16	Field Mapping_phase	Field Mapping

_GRE

GRE phase

Record only series (raw folder)

Image Added

Include the head coil used during the MRI scan in the "Comments" column of study table on Matlab.
Trace the RAW path of the series from the T: Drive and paste it to the appropriate Data Path row.
1. Note: Previous protocols included Nifti & Dicom files. Dicom & Raw folders are the same. This current protocol uses the "Raw" folder instead of the "Dicom" name.

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