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There are two many programs that do this . The first but most are obsolete.

As of June 2022: Bruker Conversion - MP3 (June 2022)

One is an SPM extension that runs in MATLAB, and the second is a python program. Since the python program is being updated, it’s the better option. It does require installing python (see Python for MTLAB ).

The python program can select the toltop-level folder for one subject and convert all the scans within.

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To install

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  • Open a Command Prompt

  • pip install bruker2nifti

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To run:

This If you added the python path when installing python, go to a command window and the the package name (bruker2nitfi).

To run the GUI, use bruker2nifti_gui

Otherwise….this is obtuse….

Navigate to and run the python file “open” in the following subfolder (see note below)

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To find the python home folder, in matlab type >> pyenv

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To check version

Open Command Prompt

Type pip show bruker2nifti

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