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Paul Macey (admin)

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Session folders

Folder

Contents (see below)

Comment

…\anatomicalsee below

…\coreg(native)

…\preproc

optional (unused)

…\raw

Required for all processing

Usually a T2-weighted image. If a T2map series was collected, one of the earlier images in the sequence (shorter TE?), but not the first one.

…\DTI

…\raw, …\coreg, …\preproc

…\fMRI

…\raw, …\coreg, …\preproc

…\T2map

…\raw, …\coreg, …\preproc

…\VBM

…\raw, …\coreg, …\preproc

Automatically generated from anatomical

Inside each modality folder:

…\raw (or native/raw not needed for anatomical)

…\coreg (“coreg (native)” for anatomical, since this defines native space)

…\preproc

 So the idea is that the coreg is ONLY the single file that needs manual coregistering.

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