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Phase I Instructions

  • [Installation] Install the MP3 medical imaging toolbox (link on Mathworks)

    • Download (either from the mathworks site or github)

    • Unzip the file; copy contents into a new folder (“MP3”)

  • Open MATLAB, but Command Prompt only (no CSPM)

  • In MATLAB, add the MP3 folder to path (>> addpath C:\Working\MP3)

    • Or just go to folder and >> addpath(pwd)

  • Start MP3 (>> MP3)

  • File, New Project (select folder)

  • File, Import Raw

  • Very helpful video: https://youtu.be/ebofxMSquFs?list=PL-Tj6Wc9aE9x7i6s-RLetvNE0isnEsFm7&t=93

  • Click Bruker, navigate to a Bruker folder with a “subject” file in it

  • Select the scans to convert

    • Yellow = selected (usually only one subject)

    • One or more series - Ctrl+Click to select multiple

  • Right-click over “subject”, “Add all files to basket”

  • Export to MP3

  • In main window, click “Load”

  • Select scan to view

DTI

See cspm_dti_getinfo

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