This function is accessed from the CSPM menu (button top-left). It converts MRI raw data to nifti, and deals with DTI data.
- Folder where raw files are located
- Option in case study data comes pre-separated into a parent folder with subfolders for each series
- For multiple DTI series, creates a folder with all DTI series combined
- Adjust the tensors by the amount the nifti image was shifted from the DICOM
- Reader gradients from the DICOM headers (some Siemens scanners; beware of early versions)
- Rename the files with either the patient ID (as in the raw files) or specify the ID