These release notes refer to the latest CSPM changes, which are uploaded to Google Drive (help getting files). Sometimes files outside of the CSPM folder are updated; if so, the notes will mention “matlab update”, in which case select the “matlab” profile option in the sync software; otherwise, just use the “CSPM” profile in the sync software.
MATLAB version: 2023a (as of April 2023, there may be problems with earlier versions). Recommend 2024a.
2024-09-13
fMRI, places where mean is calculated: in case of error, added check to detect corrupted images; if found, information will be shown.
2024-09-10
Slice overlay - refreshed file so that update should replace existing slice_overlay.m files (and let “Overlays” work - for Noemi!)
2024-09-09
Preclinical - (2nd update, 6:25 pm LA) Fixed scaling (in native space, now scales up when smoothing); fixed possible DTI bug
2024-09-08
Preclinical - Does DTI, VBM slightly better organized
CSPM - fewer warnings when creating pdf’s.
Minor updates - reviewing fMRI, since there are errors at times. But these are often file corruption issues, not software bugs
2024-08-29
Analysis - Faster GUI loading with large number of protocols
2024-08-22
Minor - fMRI new measure, note to say work off unsmoothed images; SUIT preprocess hide long message.
Physiology - lots of changes.
2024-06-25
Sets - new GUI to more easily edit sets, adding and removing studies, and creating groups.
2024-06-09
fMRI motion - at set level
2024-05-23
Cat12 - updated; should re-run CAT processing (ideally); option to redo CAT12 processing
Analysis GUI: fixed error whereby previous settings were sometimes not saved (might get one or two new errors that pop up, should be easily fixed)
Analysis GUI - can skip warning about different numebrs of files/series
Physiology - resampling option for exporting physiology files
2024-04-16
CSPM GUI - Set Stats, option to not load previous (saves time for large sets)
2024-03-12
fMRI distortion correction - leaves 3D files2024-03-07
SNR - adjusted to work better with outliers
2024-02-29
T2 info - works on subfolders, little bit of tidying
2024-02-29
preclinical - fixed bug
2024-02-28
preclinical - fixed bug
2024-02-16
VOI values - tweaked, bug fix
2024-02-16
VOI values - now have option to get spectra
Sets GUI - scrolls to selected set on startup
2024-02-15
DTI info GUI - preprocessing should run on subfolders (not tested yet)
fMRI - lmrp and intensity normalization now no longer force 32-bit real (hopefully leave at int16)
fMRI - distortion correction: Will set up on local folder (see doc)
CAT12 - updated
3D to 4D - use the code from cat12, 50 x faster!
2024-02-08
fMRI - distortion correction, will loop through fmritypes
2024-02-07
fMRI - distortion correction, fixed the replication of existing protocols; default to no distortion correction
2024-02-06
fMRI - distortion correction option - see https://osabrainresearch.atlassian.net/wiki/x/BYA2fw
NOTE: All fmri protocols will be re-done, since there is no option set in existing protocols.
