Latest Updates (release notes)

Owned by Paul Macey (admin)
Last updated: Oct 17, 2024 by Paul Macey
3 min read

These release notes refer to the latest CSPM changes, which are uploaded to Google Drive (help getting files). Sometimes files outside of the CSPM folder are updated; if so, the notes will mention “matlab update”, in which case select the “matlab” profile option in the sync software; otherwise, just use the “CSPM” profile in the sync software.

MATLAB version: 2023a (as of April 2023, there may be problems with earlier versions). Recommend 2024a.

2024-10-16

  • Projects - fixed error for first-time running in new install

  • Physiology - added IMT, some tweaks

2024-09-14

  • Preclinical - shows template voxel size

2024-09-13

  • fMRI, places where mean is calculated: in case of error, added check to detect corrupted images; if found, information will be shown.

2024-09-10

  • Slice overlay - refreshed file so that update should replace existing slice_overlay.m files (and let “Overlays” work - for Noemi!)

2024-09-09

  • Preclinical - (2nd update, 6:25 pm LA) Fixed scaling (in native space, now scales up when smoothing); fixed possible DTI bug

2024-09-08

  • Preclinical - Does DTI, VBM slightly better organized

  • CSPM - fewer warnings when creating pdf’s.

  • Minor updates - reviewing fMRI, since there are errors at times. But these are often file corruption issues, not software bugs

2024-08-29

  • Analysis - Faster GUI loading with large number of protocols

2024-08-22

  • Minor - fMRI new measure, note to say work off unsmoothed images; SUIT preprocess hide long message.

  • Physiology - lots of changes.

2024-06-25

  • Sets - new GUI to more easily edit sets, adding and removing studies, and creating groups.

image-20240625-220120.png
2024-06-09

  • fMRI motion - at set level

image-20240609-212054.png

 

2024-05-23

  • Cat12 - updated; should re-run CAT processing (ideally); option to redo CAT12 processing

  • Analysis GUI: fixed error whereby previous settings were sometimes not saved (might get one or two new errors that pop up, should be easily fixed)

  • Analysis GUI - can skip warning about different numebrs of files/series

  • Physiology - resampling option for exporting physiology files

2024-04-16

  • CSPM GUI - Set Stats, option to not load previous (saves time for large sets)

2024-03-12

  • fMRI distortion correction - leaves 3D files2024-03-07

  • SNR - adjusted to work better with outliers

2024-02-29

  • T2 info - works on subfolders, little bit of tidying

2024-02-29

  • preclinical - fixed bug

2024-02-28

  • preclinical - fixed bug

2024-02-16

  • VOI values - tweaked, bug fix

2024-02-16

  • VOI values - now have option to get spectra

  • Sets GUI - scrolls to selected set on startup

2024-02-15

  • DTI info GUI - preprocessing should run on subfolders (not tested yet)

  • fMRI - lmrp and intensity normalization now no longer force 32-bit real (hopefully leave at int16)

  • fMRI - distortion correction: Will set up on local folder (see doc)

  • CAT12 - updated

  • 3D to 4D - use the code from cat12, 50 x faster!

2024-02-08

  • fMRI - distortion correction, will loop through fmritypes

2024-02-07

  • fMRI - distortion correction, fixed the replication of existing protocols; default to no distortion correction

2024-02-06

NOTE: All fmri protocols will be re-done, since there is no option set in existing protocols.