Troubleshooting

Smoothed files not created (lh.thickness.fwhm10.fsaverage.mgz)

Some subjects do not have the smoothed files created, which will cause an error in qdec at the analysis stage. Try running recon-all with "-qcache":

https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2012-November/026461.html

[user@localhost ~]$ recon-all -subjid [CON123] -qcache