fmriprep installation on Ubuntu

(original)

Install Docker

Install Docker on Ubuntu: Quick & Easy Steps

Uninstall old packages

Set up the repository

1. Update the apt package index and install packages to allow apt to use a repository over HTTPS:

   $ sudo apt-get update $ sudo apt-get install ca-certificates curl gnupg

2. Add Docker's official GPG key:

3. Use the following command to set up the repository:

   Note

   If you use an Ubuntu derivative distro, such as Linux Mint, you may need to use UBUNTU_CODENAME instead of VERSION_CODENAME.

4. Update the apt package index:

Install Docker Engine

1. Install Docker Engine, containerd, and Docker Compose.

Latest Specific version

To install the latest version, run:

2. Verify that the Docker Engine installation is successful by running the hello-world image.

   This command downloads a test image and runs it in a container. When the container runs, it prints a confirmation message and exits.

You have now successfully installed and started Docker Engine.

Add user to non-root group

Run Docker as a non-root user – The Geek Diary

sudo groupadd docker (probably already exists)

sudo usermod -aG docker [non-root user]

but, “docker” group is only for sudo…. (help) so in your user

newgrp docker

Log out and log back in so that your group membership is re-evaluated.

sudo docker pull nipreps/fmriprep

Install wrapper

pip install --user --upgrade fmriprep-dockerpre

Add wrapper to path

sudo gedit .bashrc or .tcshrc

Add line

bash:

export PATH = ${PATH}:/home/luke/.local/bin/

c/tc shell

set path = ($path /home/[user]/.local/bin/)

Executing with Docker - NiPreps

[~] sudo apt-get install http://docker.io

Where are we….?

So from the above, we can open a terminal, then switch to superuser to be able to run commands withuot prepending with sudo