MRI Analysis Software Programming Notes

Paul's to-do

Save analysis parameters in Summary files.

Combined

The combined option analyses everything together.

The analysis is relative to the T1 image, coregistered with the MNI template and resliced. For the OSA/HF 2006 studies, we use 0.9 mm3. Other modalities are coregistered to this image. The data structure is as follows:

Sequence

Load T1 anatomical

load analyses, but pre-coreg with T1 (after copy)

analysis - defined RFx for all modalities