fmriprep installation on Ubuntu (VM)

Install Docker

https://www.simplilearn.com/tutorials/docker-tutorial/how-to-install-docker-on-ubuntu

Add user to non-root group

https://www.thegeekdiary.com/run-docker-as-a-non-root-user/

sudo groupadd docker (probably already exists)

sudo usermod -aG docker [non-root user]

but, “docker” group is only for sudo…. (help) so in your user

newgrp docker

Log out and log back in so that your group membership is re-evaluated.

sudo docker pull nipreps/fmriprep

Install wrapper

pip install --user --upgrade fmriprep-docker

Add wrapper to path

sudo gedit .tcshrc

Add line

set path = ($path /home/[user]/.local/bin/)

https://www.nipreps.org/apps/docker/

[~] sudo apt-get install docker.io