/
T1

T1

All MRI processing needs a T1. It defines the native and template space.

Input

Level

Output

Use

Input

Level

Output

Use

defines native space raw files that are resliced to voxel size, manually coregistered to template

  • No pipe dependencies

Study - T1 files from one or more MRIs will be combined at study level

Set - mean anatomical and masks; could potentially be used to create a custom template

bias corrected T1, segmentations, masks in native and template space; spatial normalization parameters (files)

CAT12 - additional files such as tissue characteristics, surface files

 

See also

Info on masks etc. https://osabrainresearch.atlassian.net/wiki/x/ZoAKBQ

Programming details https://osabrainresearch.atlassian.net/wiki/x/AQB1d

 

Related content

Preprocessing Steps
Preprocessing Steps
More like this
Legacy - Manually Aligning T1's to MNI
Legacy - Manually Aligning T1's to MNI
More like this
File flow
More like this
VBM
More like this
Setup Folders and Files
Setup Folders and Files
More like this
File Information
File Information
More like this