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Supersampling with reslice

Supersampling with reslice

High resolution zoomed-in images can be created either inCSPM with automatic over-sampling (or super-sampling) or manually.

  • For the CSPM option, go to local settings. 
  • For the manual option, from the CSPM Image menu choose Reslice

  • Enter the x/y/z voxel size (e.g., 0.3 0.3 0.3)
  • Enter the bounding box, which is xmin ymin zmin; xmax ymax zmax (e.g., -50 -80 -60; 50 20 0)
  • Linear interpolation usually works well

If you get blank spots, it may be because you have NaN's in the image; this only happens with an image of real/floating type (as opposed to integer). You can check in mricron (see below).

To change the type (overwrites image!)

  • Select from the CSPM Image menu "Change type"
  • Select int16 (or int32 if you have a range of very precise values - unusual)

Below is supersampling of a real image before (left) & after (right) type change:

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